Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| enamine deaminase rida (yjgf/yer057c/uk114 family) | BXY66_0962 | Not Available | Positive | 957239 - 957622 | 13941.5 |
| eama-like transporter family protein | BXY66_0963 | Not Available | Positive | 957654 - 958529 | 30003.5 |
| nadh:ubiquinone oxidoreductase subunit | BXY66_0964 | Not Available | Positive | 958852 - 959238 | 14501.8 |
| phospholipid/cholesterol/gamma-hch transport system substrate-binding protein | BXY66_0965 | Not Available | Positive | 959243 - 959689 | 15083.7 |
| uncharacterized protein duf2155 | BXY66_0966 | Not Available | Positive | 959689 - 960189 | 17808.1 |
| leucyl/phenylalanyl-trna--protein transferase | BXY66_0967 | Not Available | Negative | 960150 - 960770 | 22866.2 |
| biotin carboxylase /acetyl-coa carboxylase carboxyltransferase subunit alpha | BXY66_0968 | Not Available | Negative | 960790 - 962142 | 48777.4 |
| biotin carboxyl carrier protein | BXY66_0969 | Not Available | Negative | 962152 - 962658 | 17110.2 |
| pas domain s-box-containing protein | BXY66_0970 | Not Available | Negative | 962807 - 963472 | 24774.7 |
| 3-oxoacid coa-transferase subunit b | BXY66_0971 | Not Available | Negative | 963462 - 964091 | 22177.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
