Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BXY66_0932 | Not Available | Positive | 927267 - 927470 | 6268.66 |
| biotin carboxyl carrier protein /biotin carboxylase | BXY66_0933 | Not Available | Positive | 927617 - 929665 | 74445.1 |
| hypothetical protein | BXY66_0934 | Not Available | Positive | 929665 - 930069 | 14239.8 |
| putative oxidoreductase | BXY66_0935 | Not Available | Positive | 930066 - 930995 | 32777.9 |
| uncharacterized protein duf4174 | BXY66_0936 | Not Available | Negative | 931021 - 931464 | 16909.6 |
| hypothetical protein | BXY66_0937 | Not Available | Positive | 931576 - 932535 | 35488.9 |
| methylmalonyl-coa mutase | BXY66_0938 | Not Available | Positive | 932564 - 934690 | 77343.9 |
| glyoxalase-like protein | BXY66_0939 | Not Available | Positive | 934787 - 935434 | 22985.4 |
| phosphinothricin acetyltransferase | BXY66_0940 | Not Available | Positive | 935431 - 935910 | 17370.9 |
| dnaj like chaperone protein | BXY66_0941 | Not Available | Positive | 935952 - 936629 | 24898.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
