Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| opgc protein | BXY66_0912 | Not Available | Positive | 909102 - 910187 | 40952.3 |
| lysr family transcriptional regulator | BXY66_0913 | Not Available | Negative | 910184 - 911059 | 30863.2 |
| l-lysine exporter family protein lyse/argo | BXY66_0914 | Not Available | Positive | 911148 - 911750 | 21032.8 |
| hypothetical protein | BXY66_0915 | Not Available | Positive | 911847 - 912779 | 34198.5 |
| threonine/homoserine efflux transporter rhta | BXY66_0916 | Not Available | Positive | 912852 - 913757 | 32245.7 |
| hypothetical protein | BXY66_0917 | Not Available | Positive | 913814 - 914470 | 23583.8 |
| tetr family transcriptional regulator | BXY66_0918 | Not Available | Negative | 914475 - 915059 | 22053.5 |
| betaine aldehyde dehydrogenase | BXY66_0919 | Not Available | Positive | 915223 - 916674 | 51515.3 |
| choline dehydrogenase | BXY66_0920 | Not Available | Positive | 916739 - 918394 | 60308.6 |
| hypothetical protein | BXY66_0921 | Not Available | Negative | 918391 - 919176 | 28352.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
