Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized protein duf1992 | BXY66_0902 | Not Available | Positive | 897170 - 897475 | 11503.7 |
| flp pilus assembly protein tadd | BXY66_0903 | Not Available | Negative | 897479 - 899197 | 63754.7 |
| putative sos response-associated peptidase yedk | BXY66_0904 | Not Available | Positive | 899323 - 899985 | 24386.0 |
| (s)-ureidoglycine aminohydrolase | BXY66_0905 | Not Available | Positive | 900114 - 900935 | 30658.4 |
| d-3-hydroxyaspartate aldolase | BXY66_0906 | Not Available | Positive | 900965 - 902119 | 41104.8 |
| glyceraldehyde 3-phosphate dehydrogenase | BXY66_0907 | Not Available | Positive | 902241 - 903239 | 35445.5 |
| allosteric nadp-dependent malic enzyme | BXY66_0908 | Not Available | Positive | 903270 - 905546 | 82369.2 |
| di/tricarboxylate transporter | BXY66_0909 | Not Available | Negative | 905625 - 907397 | 61923.8 |
| yebc/pmpr family dna-binding regulatory protein | BXY66_0910 | Not Available | Positive | 907537 - 908277 | 26955.3 |
| uncharacterized protein ydei (yjbr/cyay-like superfamily) | BXY66_0911 | Not Available | Positive | 908421 - 908996 | 21829.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
