Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized protein upf0029 | BXY66_0892 | Not Available | Positive | 890536 - 890889 | 12961.7 |
| hypothetical protein | BXY66_0893 | Not Available | Positive | 890952 - 891215 | 9569.76 |
| hypothetical protein | BXY66_0894 | Not Available | Positive | 891212 - 891487 | 10002.0 |
| hypothetical protein | BXY66_0895 | Not Available | Positive | 891484 - 891756 | 9738.69 |
| putative dcc family thiol-disulfide oxidoreductase yuxk | BXY66_0896 | Not Available | Negative | 891762 - 892139 | 14279.2 |
| ssu ribosomal protein s12p methylthiotransferase | BXY66_0897 | Not Available | Negative | 892181 - 893590 | 51832.3 |
| arsenate reductase | BXY66_0898 | Not Available | Negative | 893681 - 894019 | 12573.6 |
| dihydroorotate oxidase a | BXY66_0899 | Not Available | Negative | 894016 - 895083 | 36979.5 |
| uncharacterized protein (duf952 family) | BXY66_0900 | Not Available | Negative | 895080 - 895421 | 12405.5 |
| 5'-nucleotidase | BXY66_0901 | Not Available | Positive | 895544 - 897106 | 54756.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
