Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rimj/riml family protein n-acetyltransferase | BXY66_0882 | Not Available | Positive | 884390 - 885103 | 26842.6 |
| chey-like chemotaxis protein | BXY66_0883 | Not Available | Negative | 885100 - 885819 | 25628.7 |
| methylmalonyl-coa epimerase /ethylmalonyl-coa epimerase | BXY66_0884 | Not Available | Positive | 885984 - 886388 | 14451.3 |
| putative secreted protein | BXY66_0885 | Not Available | Positive | 886440 - 886745 | 10981.6 |
| uncharacterized protein involved in cysteine biosynthesis | BXY66_0886 | Not Available | Negative | 886711 - 887412 | 25756.3 |
| nitroreductase | BXY66_0887 | Not Available | Negative | 887403 - 887975 | 20800.9 |
| acetoin utilization deacetylase acuc-like enzyme | BXY66_0888 | Not Available | Negative | 888028 - 889149 | 39923.4 |
| hypothetical protein | BXY66_0889 | Not Available | Positive | 889223 - 889474 | 8847.93 |
| hypothetical protein | BXY66_0890 | Not Available | Negative | 889471 - 889710 | 8841.37 |
| peptidase m48-like protein | BXY66_0891 | Not Available | Positive | 889811 - 890533 | 25258.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
