Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ca-activated chloride channel family protein | BXY66_0862 | Not Available | Positive | 856422 - 857873 | 51243.4 |
| putative o-linked n-acetylglucosamine transferase (spindly family) | BXY66_0863 | Not Available | Positive | 858373 - 860538 | 79929.6 |
| sulfotransferase family protein | BXY66_0864 | Not Available | Positive | 860571 - 862046 | 54931.2 |
| diguanylate cyclase (ggdef)-like protein | BXY66_0865 | Not Available | Negative | 862173 - 863993 | 66646.1 |
| outer membrane protein with glycine zipper | BXY66_0866 | Not Available | Positive | 864227 - 864511 | 9563.0 |
| arac-like dna-binding protein | BXY66_0867 | Not Available | Negative | 864656 - 865660 | 37097.6 |
| alginate o-acetyltransferase algf | BXY66_0868 | Not Available | Positive | 866000 - 866584 | 20430.5 |
| alginate o-acetyltransferase complex protein algi | BXY66_0869 | Not Available | Positive | 866588 - 867964 | 50992.0 |
| alginate o-acetyltransferase complex protein algj | BXY66_0870 | Not Available | Positive | 867975 - 868979 | 36626.4 |
| acetyltransferase algx (sgnh hydrolase-like protein) | BXY66_0871 | Not Available | Positive | 868984 - 870288 | 47063.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
