Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding laci/purr family transcriptional regulator | BXY66_0842 | Not Available | Positive | 828700 - 829743 | 37638.6 |
| snoal-like polyketide cyclase | BXY66_0843 | Not Available | Positive | 829743 - 830732 | 36547.0 |
| cupin domain-containing protein | BXY66_0844 | Not Available | Positive | 830893 - 831858 | 34392.7 |
| 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase | BXY66_0845 | Not Available | Positive | 832013 - 833146 | 41385.8 |
| pimeloyl-acp methyl ester carboxylesterase | BXY66_0846 | Not Available | Positive | 833143 - 833841 | 25118.6 |
| regulator of rnase e activity rraa | BXY66_0847 | Not Available | Positive | 833838 - 834533 | 24816.8 |
| acetolactate synthase large subunit | BXY66_0848 | Not Available | Positive | 834618 - 836321 | 61047.6 |
| choline-sulfatase | BXY66_0849 | Not Available | Negative | 836864 - 838402 | 57488.4 |
| hlyd family type i secretion membrane fusion protein | BXY66_0850 | Not Available | Negative | 838693 - 840048 | 49994.2 |
| atp-binding cassette subfamily c protein/atp-binding cassette subfamily c exporter for protease/lipase | BXY66_0851 | Not Available | Negative | 840045 - 842120 | 73887.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
