Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate abc transporter substrate-binding protein (cut1 family) | BXY66_0832 | Not Available | Positive | 819088 - 820332 | 43207.1 |
| carbohydrate abc transporter membrane protein 1 (cut1 family) | BXY66_0833 | Not Available | Positive | 820402 - 821433 | 37707.7 |
| carbohydrate abc transporter membrane protein 2 (cut1 family) | BXY66_0834 | Not Available | Positive | 821447 - 822328 | 32731.4 |
| snoal-like polyketide cyclase | BXY66_0835 | Not Available | Positive | 822403 - 823347 | 34743.5 |
| choline dehydrogenase-like flavoprotein | BXY66_0836 | Not Available | Positive | 823347 - 824828 | 52947.0 |
| hypothetical protein | BXY66_0837 | Not Available | Positive | 824825 - 824959 | 4669.73 |
| putative ester cyclase | BXY66_0838 | Not Available | Positive | 824956 - 825483 | 19805.1 |
| sulfopropanediol 3-dehydrogenase | BXY66_0839 | Not Available | Positive | 825498 - 826826 | 47952.1 |
| snoal-like polyketide cyclase | BXY66_0840 | Not Available | Positive | 826884 - 827936 | 39699.1 |
| 2-deoxy-d-gluconate 3-dehydrogenase | BXY66_0841 | Not Available | Positive | 827936 - 828700 | 26344.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
