Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate abc transporter atp-binding protein (cut1 family) | BXY66_0822 | Not Available | Positive | 810113 - 811195 | 39404.0 |
| carbohydrate abc transporter atp-binding protein (cut1 family) | BXY66_0823 | Not Available | Positive | 811205 - 812290 | 39537.6 |
| carbohydrate abc transporter membrane protein 1 (cut1 family) | BXY66_0824 | Not Available | Positive | 812287 - 813150 | 32391.3 |
| carbohydrate abc transporter membrane protein 2 (cut1 family) | BXY66_0825 | Not Available | Positive | 813163 - 813960 | 29367.4 |
| putative small integral membrane protein | BXY66_0826 | Not Available | Positive | 813960 - 814238 | 10164.8 |
| putative transcriptional regulator | BXY66_0827 | Not Available | Positive | 814298 - 814723 | 15928.2 |
| blar1 peptidase m56 | BXY66_0828 | Not Available | Positive | 814720 - 815859 | 42619.7 |
| putative tim-barrel fold metal-dependent hydrolase | BXY66_0829 | Not Available | Negative | 815862 - 816731 | 32422.2 |
| ketosteroid isomerase-like protein | BXY66_0830 | Not Available | Negative | 816725 - 817762 | 38969.6 |
| multiple sugar transport system atp-binding protein | BXY66_0831 | Not Available | Positive | 817937 - 818989 | 38216.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
