Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyl transferase family 90 | BXY66_0811 | Not Available | Positive | 794259 - 795248 | 37719.5 |
| Trna-ser | Not Available | Not Available | Positive | 795375 - 795461 | Not Available |
| uncharacterized protein duf4114 | BXY66_0813 | Not Available | Negative | 796473 - 801833 | 185701.0 |
| hypothetical protein | BXY66_0814 | Not Available | Negative | 802586 - 803806 | 43787.9 |
| dna-binding marr family transcriptional regulator | BXY66_0815 | Not Available | Positive | 804029 - 804499 | 17653.3 |
| hypothetical protein | BXY66_0817 | Not Available | Negative | 804761 - 805273 | 18078.6 |
| putative abc transport system permease protein | BXY66_0818 | Not Available | Negative | 805296 - 806546 | 44777.8 |
| putative abc transport system atp-binding protein | BXY66_0819 | Not Available | Negative | 806543 - 807238 | 24758.8 |
| uncharacterized protein duf2796 | BXY66_0820 | Not Available | Negative | 807261 - 807983 | 26125.9 |
| carbohydrate abc transporter substrate-binding protein (cut1 family) | BXY66_0821 | Not Available | Positive | 808272 - 810005 | 64103.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
