Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| signal recognition particle subunit ffh/srp54 (srp54) | BXY66_0069 | Not Available | Negative | 65338 - 66861 | 54122.0 |
| Ncrna_class:other | Not Available | Not Available | Positive | 66926 - 66977 | Not Available |
| hypothetical protein | BXY66_0071 | Not Available | Negative | 67199 - 67645 | 15585.0 |
| ala-trna(pro) deacylase | BXY66_0072 | Not Available | Positive | 67816 - 68349 | 19931.9 |
| prolyl-trna editing enzyme ybak/ebsc (cys-trna(pro) deacylase) | BXY66_0073 | Not Available | Positive | 68363 - 68830 | 16388.8 |
| fmn-dependent nadh-azoreductase | BXY66_0074 | Not Available | Negative | 68925 - 69467 | 19096.5 |
| lysr family transcriptional regulator | BXY66_0075 | Not Available | Positive | 69595 - 70476 | 32403.3 |
| eama-like transporter family protein | BXY66_0076 | Not Available | Positive | 70473 - 71354 | 31309.1 |
| arsr family transcriptional regulator | BXY66_0077 | Not Available | Negative | 71376 - 71774 | 14400.2 |
| atp synthase protein i | BXY66_0078 | Not Available | Positive | 72006 - 72341 | 12489.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
