Shimia isoporae str. DSM 26433

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Shimia

Description

Shimia isoporae strain DSM 26433 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 29.0°C. This specific temperature preference suggests that S. isoporae may be well-adapted to environments that are moderately warm, potentially indicating a niche within temperate regions or specific habitats where such thermal conditions prevail. As a Gram-negative organism, S. isoporae possesses a distinctive cell wall structure characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural feature is associated with various functional implications, including resistance to certain antibiotics and the ability to interact with host organisms in unique ways, although specific interactions remain to be elucidated. The aerobic nature of S. isoporae indicates that it relies on oxygen for its metabolic processes, which may influence its ecological roles, such as organic matter decomposition or nutrient cycling in its environment. Understanding the metabolic pathways and ecological interactions of S. isoporae could contribute valuable insights into the dynamics of microbial communities in which it participates. Overall, the traits of Shimia isoporae suggest its potential importance in specific ecological contexts, particularly in environments where aerobic activity is a key component of ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusShimia
SpeciesShimia isoporae
StrainDSM 26433

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shimia isoporae strain DSM 26433 Ga0170381_19, whole genome

Gene Summary

Adenine Count

920505 bp

Thymine Count

914254 bp

Guanine Count

1190771 bp

Cytosine Count

1207235 bp

Genome Length

4232765 bp

Protein-coding Genes

4082 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
signal recognition particle subunit ffh/srp54 (srp54)BXY66_0069Not AvailableNegative65338 - 6686154122.0
Ncrna_class:otherNot AvailableNot AvailablePositive66926 - 66977Not Available
hypothetical proteinBXY66_0071Not AvailableNegative67199 - 6764515585.0
ala-trna(pro) deacylaseBXY66_0072Not AvailablePositive67816 - 6834919931.9
prolyl-trna editing enzyme ybak/ebsc (cys-trna(pro) deacylase)BXY66_0073Not AvailablePositive68363 - 6883016388.8
fmn-dependent nadh-azoreductaseBXY66_0074Not AvailableNegative68925 - 6946719096.5
lysr family transcriptional regulatorBXY66_0075Not AvailablePositive69595 - 7047632403.3
eama-like transporter family proteinBXY66_0076Not AvailablePositive70473 - 7135431309.1
arsr family transcriptional regulatorBXY66_0077Not AvailableNegative71376 - 7177414400.2
atp synthase protein iBXY66_0078Not AvailablePositive72006 - 7234112489.3

Displaying genes 71 – 80 of 4136 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.