Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BXY66_0781 | Not Available | Positive | 766702 - 766947 | 8844.66 |
| acetyl esterase/lipase | BXY66_0782 | Not Available | Positive | 767033 - 767971 | 33516.2 |
| arac family transcriptional regulator | BXY66_0783 | Not Available | Positive | 768111 - 769004 | 31798.1 |
| ssu ribosomal protein s1p | BXY66_0784 | Not Available | Positive | 769545 - 771224 | 61256.6 |
| hypothetical protein | BXY66_0785 | Not Available | Positive | 771348 - 771701 | 12989.5 |
| 2-methylisocitrate lyase-like pep mutase family enzyme | BXY66_0786 | Not Available | Negative | 771729 - 772499 | 26961.2 |
| arac family transcriptional regulator of adaptative response/methylated-dna-[protein]-cysteine methyltransferase | BXY66_0787 | Not Available | Negative | 772496 - 773569 | 39318.0 |
| integration host factor subunit beta | BXY66_0788 | Not Available | Positive | 773907 - 774188 | 10745.8 |
| uncharacterized protein duf1049 | BXY66_0789 | Not Available | Positive | 774190 - 774540 | 12993.2 |
| phosphoribosylanthranilate isomerase | BXY66_0790 | Not Available | Positive | 774579 - 775223 | 22989.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
