Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| apolipoprotein n-acyltransferase | BXY66_0771 | Not Available | Positive | 756297 - 757811 | 53559.2 |
| methionine adenosyltransferase | BXY66_0772 | Not Available | Positive | 757904 - 759085 | 42456.7 |
| bass family bile acid:na+ symporter | BXY66_0773 | Not Available | Positive | 759266 - 760126 | 29586.9 |
| trna (guanine-n(7)-)-methyltransferase | BXY66_0774 | Not Available | Positive | 760189 - 760911 | 27809.0 |
| amidohydrolase family protein | BXY66_0775 | Not Available | Positive | 760989 - 762050 | 40512.5 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | BXY66_0776 | Not Available | Positive | 762142 - 763488 | 46595.9 |
| cytidylate kinase | BXY66_0777 | Not Available | Positive | 763492 - 764103 | 21123.1 |
| putative surface protein with fasciclin (fas1) repeats | BXY66_0778 | Not Available | Positive | 764215 - 765402 | 40618.6 |
| hxlr family transcriptional regulator | BXY66_0779 | Not Available | Negative | 765406 - 765795 | 14671.7 |
| nitroreductase | BXY66_0780 | Not Available | Positive | 765940 - 766575 | 23739.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
