Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-threonine ammonia-lyase | BXY66_0751 | Not Available | Negative | 737418 - 738392 | 33787.6 |
| pimeloyl-acp methyl ester carboxylesterase | BXY66_0752 | Not Available | Negative | 738389 - 739228 | 30711.5 |
| 2-haloacid dehalogenase | BXY66_0753 | Not Available | Negative | 739232 - 739915 | 24979.5 |
| fkbp-type peptidyl-prolyl cis-trans isomerase 2 | BXY66_0754 | Not Available | Positive | 740056 - 740484 | 15159.9 |
| nitronate monooxygenase | BXY66_0755 | Not Available | Positive | 740584 - 741663 | 36441.4 |
| enoyl-[acyl-carrier-protein] reductase | BXY66_0756 | Not Available | Negative | 741803 - 742594 | 27997.3 |
| 3-oxoacyl-[acyl-carrier-protein] synthase i | BXY66_0757 | Not Available | Negative | 742602 - 743831 | 42369.4 |
| methylthioacryloyl-coa hydratase | BXY66_0758 | Not Available | Negative | 743933 - 744739 | 28799.3 |
| cubico group peptidase (beta-lactamase class c family) | BXY66_0759 | Not Available | Positive | 745019 - 746353 | 47838.6 |
| 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase | BXY66_0760 | Not Available | Negative | 746434 - 746940 | 18447.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
