Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arsr family transcriptional regulator | BXY66_0741 | Not Available | Negative | 728085 - 728417 | 12089.6 |
| l-alanine-dl-glutamate epimerase-like enolase superfamily enzyme | BXY66_0742 | Not Available | Negative | 728479 - 729708 | 44844.4 |
| phosphonate degradation associated hdig domain protein | BXY66_0743 | Not Available | Negative | 729828 - 730409 | 21703.6 |
| gamma-butyrobetaine dioxygenase | BXY66_0744 | Not Available | Negative | 730406 - 731530 | 41161.5 |
| hypothetical protein | BXY66_0745 | Not Available | Negative | 731626 - 731997 | 13576.1 |
| zn-dependent alcohol dehydrogenase | BXY66_0746 | Not Available | Negative | 732022 - 733110 | 37458.4 |
| dha1 family tetracycline resistance protein-like mfs transporter | BXY66_0747 | Not Available | Negative | 733198 - 734400 | 42503.3 |
| pimeloyl-acp methyl ester carboxylesterase | BXY66_0748 | Not Available | Negative | 734515 - 735225 | 26006.6 |
| 3-oxoadipate enol-lactonase | BXY66_0749 | Not Available | Negative | 735218 - 736006 | 28486.6 |
| endonuclease/exonuclease/phosphatase family protein | BXY66_0750 | Not Available | Negative | 736006 - 737202 | 45089.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
