Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna(ile)-lysidine synthase | BXY66_0731 | Not Available | Positive | 716163 - 717359 | 43415.8 |
| membrane protease ftsh catalytic subunit | BXY66_0732 | Not Available | Positive | 717468 - 719393 | 69153.6 |
| mosc domain-containing protein | BXY66_0733 | Not Available | Positive | 719675 - 720274 | 21525.7 |
| formate-tetrahydrofolate ligase | BXY66_0734 | Not Available | Positive | 720452 - 722128 | 59962.0 |
| chorismate mutase | BXY66_0735 | Not Available | Positive | 722192 - 722488 | 10979.2 |
| methylenetetrahydrofolate dehydrogenase (nadp+)/methenyltetrahydrofolate cyclohydrolase | BXY66_0736 | Not Available | Positive | 722500 - 723393 | 31498.3 |
| methenyltetrahydrofolate cyclohydrolase /5,10-methylenetetrahydrofolate dehydrogenase (nadp+) | BXY66_0737 | Not Available | Positive | 723406 - 724308 | 31299.9 |
| uncharacterized protein (tigr00369 family) | BXY66_0738 | Not Available | Negative | 724359 - 724787 | 15244.7 |
| putative phosphoesterase | BXY66_0739 | Not Available | Negative | 724894 - 725556 | 24253.1 |
| atp-dependent lhr-like helicase | BXY66_0740 | Not Available | Negative | 725665 - 728088 | 89003.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
