Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BXY66_0721 | Not Available | Positive | 706835 - 707464 | 22799.3 |
| glutamate synthase domain-containing protein 2 | BXY66_0722 | Not Available | Positive | 707607 - 709139 | 53720.3 |
| small conductance mechanosensitive channel | BXY66_0723 | Not Available | Positive | 709264 - 710547 | 46458.0 |
| acyl-coa thioester hydrolase | BXY66_0724 | Not Available | Positive | 710620 - 711006 | 14789.0 |
| cell division and transport-associated protein tolq | BXY66_0725 | Not Available | Positive | 711118 - 711792 | 24447.6 |
| cell division and transport-associated protein tolr | BXY66_0726 | Not Available | Positive | 711796 - 712275 | 16502.1 |
| cell division and transport-associated protein tola | BXY66_0727 | Not Available | Positive | 712292 - 713377 | 38064.0 |
| tolb protein | BXY66_0728 | Not Available | Positive | 713374 - 714699 | 47480.3 |
| peptidoglycan-associated lipoprotein | BXY66_0729 | Not Available | Positive | 714776 - 715276 | 17404.4 |
| tol-pal system protein ybgf | BXY66_0730 | Not Available | Positive | 715296 - 716141 | 29395.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
