Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BXY66_0711 | Not Available | Negative | 696263 - 696973 | 26079.2 |
| replication restart dna helicase pria | BXY66_0712 | Not Available | Positive | 697152 - 699359 | 80440.2 |
| hypothetical protein | BXY66_0713 | Not Available | Positive | 699519 - 700751 | 45509.7 |
| putative mate family efflux protein | BXY66_0714 | Not Available | Positive | 700755 - 702122 | 47799.0 |
| [lsu ribosomal protein l11p]-lysine n-methyltransferase | BXY66_0715 | Not Available | Positive | 702153 - 703022 | 30181.8 |
| hypothetical protein | BXY66_0716 | Not Available | Positive | 703292 - 703639 | 12909.7 |
| uncharacterized protein duf1127 | BXY66_0717 | Not Available | Negative | 703807 - 703995 | 6779.81 |
| holliday junction endonuclease ruvc | BXY66_0718 | Not Available | Positive | 704330 - 704836 | 17420.1 |
| holliday junction dna helicase subunit ruva | BXY66_0719 | Not Available | Positive | 704833 - 705543 | 24098.9 |
| holliday junction dna helicase subunit ruvb | BXY66_0720 | Not Available | Positive | 705547 - 706572 | 37638.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
