Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adenylate cyclase | BXY66_0701 | Not Available | Negative | 686780 - 687724 | 34079.4 |
| hypothetical protein | BXY66_0702 | Not Available | Positive | 687922 - 688437 | 17484.7 |
| abc-2 type transport system atp-binding protein | BXY66_0703 | Not Available | Positive | 688587 - 689516 | 33715.9 |
| abc-2 type transport system permease protein | BXY66_0704 | Not Available | Positive | 689513 - 690274 | 27780.8 |
| signal peptide peptidase sppa | BXY66_0705 | Not Available | Positive | 690376 - 691173 | 28853.6 |
| hypothetical protein | BXY66_0706 | Not Available | Positive | 691176 - 691343 | 6039.94 |
| cation:h+ antiporter | BXY66_0707 | Not Available | Positive | 691347 - 692300 | 33873.6 |
| nad(p)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) | BXY66_0708 | Not Available | Positive | 692323 - 693102 | 27277.6 |
| excinuclease abc subunit c | BXY66_0709 | Not Available | Positive | 693469 - 695343 | 68969.4 |
| integrase/recombinase xerc | BXY66_0710 | Not Available | Negative | 695352 - 696266 | 32862.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
