Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) | BXY66_0691 | Not Available | Positive | 676640 - 677395 | 26024.4 |
| 3-hydroxyacyl-coa dehydrogenase | BXY66_0692 | Not Available | Positive | 677417 - 679504 | 74050.3 |
| alkylation response protein aidb-like acyl-coa dehydrogenase | BXY66_0693 | Not Available | Positive | 679509 - 680696 | 44106.8 |
| alkylation response protein aidb-like acyl-coa dehydrogenase | BXY66_0694 | Not Available | Positive | 680698 - 681768 | 37568.0 |
| hypothetical protein | BXY66_0695 | Not Available | Positive | 681791 - 682801 | 36056.4 |
| hypothetical protein | BXY66_0696 | Not Available | Negative | 682855 - 683268 | 15523.6 |
| hypothetical protein | BXY66_0697 | Not Available | Negative | 683346 - 683801 | 16420.3 |
| hypothetical protein | BXY66_0698 | Not Available | Negative | 683889 - 684647 | 27276.4 |
| acetyl-coa c-acetyltransferase | BXY66_0699 | Not Available | Negative | 684758 - 685960 | 42105.6 |
| acyl dehydratase | BXY66_0700 | Not Available | Negative | 686054 - 686536 | 17761.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
