Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (guanine37-n(1)-) methyltransferase | BXY66_0059 | Not Available | Negative | 59076 - 59879 | 29635.4 |
| hypothetical protein | BXY66_0060 | Not Available | Negative | 59872 - 60696 | 30796.9 |
| hypothetical protein | BXY66_0061 | Not Available | Negative | 60714 - 61508 | 29289.1 |
| 16s rrna processing protein rimm | BXY66_0062 | Not Available | Negative | 61605 - 62120 | 17993.4 |
| cob(ii)yrinic acid a,c-diamide reductase | BXY66_0063 | Not Available | Negative | 62250 - 62879 | 23369.6 |
| ssu ribosomal protein s16p | BXY66_0064 | Not Available | Negative | 62897 - 63280 | 14257.9 |
| chorismate mutase | BXY66_0065 | Not Available | Negative | 63386 - 63682 | 11248.4 |
| rimj/riml family protein n-acetyltransferase | BXY66_0066 | Not Available | Negative | 63675 - 64280 | 22944.2 |
| rimj/riml family protein n-acetyltransferase | BXY66_0067 | Not Available | Negative | 64277 - 64804 | 19529.1 |
| rimj/riml family protein n-acetyltransferase | BXY66_0068 | Not Available | Negative | 64801 - 65334 | 19611.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
