Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arsr family transcriptional regulator | BXY66_0671 | Not Available | Positive | 658512 - 658817 | 11345.6 |
| uncharacterized protein yndb with ahsa1/start domain | BXY66_0672 | Not Available | Positive | 658814 - 659263 | 16556.4 |
| ketol-acid reductoisomerase | BXY66_0673 | Not Available | Negative | 659314 - 660336 | 37263.9 |
| lrp/asnc family transcriptional regulator | BXY66_0674 | Not Available | Positive | 660478 - 660933 | 17388.0 |
| dna-binding lrp family transcriptional regulator | BXY66_0675 | Not Available | Positive | 660930 - 661418 | 17976.9 |
| diguanylate cyclase (ggdef)-like protein | BXY66_0676 | Not Available | Positive | 661466 - 662200 | 27048.5 |
| aspartate aminotransferase-like enzyme | BXY66_0677 | Not Available | Positive | 662279 - 663403 | 40500.3 |
| 2-octaprenyl-6-methoxyphenol hydroxylase | BXY66_0678 | Not Available | Negative | 663461 - 664669 | 43804.9 |
| hypothetical protein | BXY66_0679 | Not Available | Negative | 664743 - 664922 | 6229.03 |
| putative hydrolase of the had superfamily | BXY66_0680 | Not Available | Negative | 665059 - 665703 | 24276.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
