Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BXY66_0651 | Not Available | Negative | 633468 - 634271 | 27547.8 |
| aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit a | BXY66_0652 | Not Available | Negative | 634308 - 635795 | 52666.5 |
| aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit c | BXY66_0653 | Not Available | Negative | 635842 - 636129 | 10442.4 |
| gst-like protein | BXY66_0654 | Not Available | Negative | 636363 - 637049 | 26086.0 |
| o-succinylhomoserine sulfhydrylase | BXY66_0655 | Not Available | Positive | 637293 - 638480 | 42416.4 |
| gtp cyclohydrolase i | BXY66_0656 | Not Available | Positive | 638638 - 639735 | 41276.6 |
| trk system potassium uptake protein trkh | BXY66_0657 | Not Available | Positive | 639880 - 641328 | 51691.1 |
| acetolactate synthase-1/2/3 large subunit/5-guanidino-2-oxopentanoate decarboxylase | BXY66_0658 | Not Available | Positive | 641328 - 642974 | 59094.7 |
| putative peptidoglycan binding protein | BXY66_0659 | Not Available | Negative | 643049 - 644806 | 62720.0 |
| glycyl-trna synthetase alpha chain | BXY66_0660 | Not Available | Positive | 644959 - 645888 | 35117.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
