Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| molybdopterin/thiamine biosynthesis adenylyltransferase | BXY66_0641 | Not Available | Positive | 623253 - 624314 | 37550.9 |
| peptidyl-dipeptidase dcp | BXY66_0642 | Not Available | Positive | 624448 - 626460 | 73688.9 |
| intracellular septation protein | BXY66_0643 | Not Available | Negative | 626575 - 627207 | 23790.7 |
| putative membrane protein | BXY66_0644 | Not Available | Negative | 627218 - 628120 | 32571.4 |
| signal recognition particle-docking protein ftsy | BXY66_0645 | Not Available | Negative | 628178 - 629380 | 42203.4 |
| yhhn-like protein | BXY66_0646 | Not Available | Negative | 629431 - 630108 | 24157.4 |
| nucleoside-diphosphate-sugar epimerase | BXY66_0647 | Not Available | Positive | 630254 - 631138 | 33034.9 |
| 3-hydroxyisobutyrate dehydrogenase-like beta-hydroxyacid dehydrogenase | BXY66_0648 | Not Available | Negative | 631135 - 632028 | 30905.1 |
| Ncrna_class:rnase_p_rna | Not Available | Not Available | Positive | 632367 - 632743 | Not Available |
| n-acetylmuramoyl-l-alanine amidase | BXY66_0650 | Not Available | Negative | 632802 - 633464 | 24312.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
