Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| catechol 2,3-dioxygenase | BXY66_0621 | Not Available | Negative | 603666 - 604151 | 17446.4 |
| tetr family transcriptional regulator | BXY66_0622 | Not Available | Negative | 604247 - 604828 | 21150.2 |
| alpha-beta hydrolase superfamily lysophospholipase | BXY66_0623 | Not Available | Positive | 604949 - 605851 | 34162.7 |
| tryptophanyl-trna synthetase | BXY66_0624 | Not Available | Negative | 605908 - 606945 | 37799.3 |
| rhomboid family protein | BXY66_0625 | Not Available | Positive | 607052 - 607738 | 24549.5 |
| uncharacterized membrane protein hded (duf308 family) | BXY66_0626 | Not Available | Negative | 607740 - 608270 | 18006.6 |
| putative peptidoglycan lipid ii flippase | BXY66_0627 | Not Available | Negative | 608387 - 609931 | 55475.3 |
| utp--glnb (protein pii) uridylyltransferase glnd | BXY66_0628 | Not Available | Negative | 609928 - 612735 | 105980.0 |
| amino acid/amide abc transporter substrate-binding protein (haat family) | BXY66_0629 | Not Available | Negative | 612695 - 613861 | 39315.0 |
| 16s rrna (cytidine1402-2'-o)-methyltransferase | BXY66_0630 | Not Available | Positive | 613956 - 614819 | 30512.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
