Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BXY66_0601 | Not Available | Positive | 584524 - 585099 | 20706.0 |
| hypothetical protein | BXY66_0602 | Not Available | Positive | 585264 - 586178 | 32318.6 |
| uncharacterized protein (tigr02186 family) | BXY66_0603 | Not Available | Positive | 586178 - 586945 | 27752.8 |
| hypothetical protein | BXY66_0604 | Not Available | Positive | 587058 - 587843 | 27739.7 |
| nadp-dependent 3-hydroxy acid dehydrogenase ydfg | BXY66_0605 | Not Available | Negative | 587889 - 588617 | 25408.7 |
| exodeoxyribonuclease-5 | BXY66_0606 | Not Available | Negative | 588614 - 590146 | 56457.6 |
| nucleoside abc transporter membrane protein | BXY66_0607 | Not Available | Negative | 590260 - 591270 | 35714.4 |
| nucleoside abc transporter membrane protein | BXY66_0608 | Not Available | Negative | 591270 - 592364 | 39319.2 |
| nucleoside abc transporter atp-binding protein | BXY66_0609 | Not Available | Negative | 592357 - 593934 | 57086.8 |
| hypothetical protein | BXY66_0610 | Not Available | Negative | 593931 - 594287 | 12828.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
