Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyl transferase family 2 | BXY66_0591 | Not Available | Positive | 573645 - 574367 | 27562.8 |
| hypothetical protein | BXY66_0592 | Not Available | Positive | 574573 - 574722 | 5626.41 |
| hypothetical protein | BXY66_0593 | Not Available | Positive | 574832 - 576472 | 59630.1 |
| hypothetical protein | BXY66_0594 | Not Available | Positive | 576496 - 577341 | 30774.1 |
| uncharacterized protein duf4399 | BXY66_0595 | Not Available | Positive | 577423 - 577857 | 15145.0 |
| purine-nucleoside phosphorylase | BXY66_0596 | Not Available | Negative | 578012 - 578716 | 25126.1 |
| dna-binding protein h-ns | BXY66_0597 | Not Available | Negative | 578860 - 579180 | 11850.2 |
| (r)-ethylmalonyl-coa mutase | BXY66_0598 | Not Available | Negative | 579357 - 581336 | 72270.2 |
| glycerol-3-phosphate acyltransferase | BXY66_0599 | Not Available | Positive | 581533 - 582891 | 51274.3 |
| crotonyl-coa carboxylase/reductase | BXY66_0600 | Not Available | Positive | 583043 - 584329 | 47496.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
