Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| radical sam family protein | BXY66_0049 | Not Available | Positive | 49534 - 50409 | 33021.9 |
| glycosyl transferase family 2 | BXY66_0050 | Not Available | Positive | 50569 - 51567 | 37163.9 |
| fad dependent oxidoreductase | BXY66_0051 | Not Available | Positive | 51557 - 52813 | 45650.2 |
| ca2+-binding rtx toxin-like protein | BXY66_0052 | Not Available | Negative | 53142 - 54908 | 62266.0 |
| lsu ribosomal protein l31p | BXY66_0053 | Not Available | Negative | 55098 - 55319 | 8148.71 |
| lsu ribosomal protein l19p | BXY66_0054 | Not Available | Negative | 55331 - 55705 | 13761.6 |
| marr family transcriptional regulator | BXY66_0055 | Not Available | Positive | 56012 - 56398 | 14427.1 |
| hypothetical protein | BXY66_0056 | Not Available | Positive | 56469 - 56858 | 14496.0 |
| lysozyme | BXY66_0057 | Not Available | Positive | 56975 - 57790 | 30723.1 |
| hypothetical protein | BXY66_0058 | Not Available | Positive | 57904 - 59001 | 39955.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
