Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BXY66_0581 | Not Available | Positive | 566392 - 566595 | 7601.99 |
| l-erythro-3-methylmalyl-coa dehydratase | BXY66_0582 | Not Available | Positive | 566596 - 567627 | 37515.3 |
| putative metallopeptidase duf4344 | BXY66_0583 | Not Available | Positive | 567635 - 568387 | 27716.3 |
| ca-activated chloride channel family protein | BXY66_0584 | Not Available | Positive | 568440 - 569099 | 23780.3 |
| hypothetical protein | BXY66_0585 | Not Available | Positive | 569096 - 569197 | 3703.3 |
| succinate dehydrogenase subunit c | BXY66_0586 | Not Available | Positive | 569362 - 569745 | 13700.0 |
| succinate dehydrogenase / fumarate reductase membrane anchor subunit | BXY66_0587 | Not Available | Positive | 569757 - 570128 | 13566.0 |
| succinate dehydrogenase subunit a | BXY66_0588 | Not Available | Positive | 570140 - 571945 | 65059.6 |
| hypothetical protein | BXY66_0589 | Not Available | Positive | 571955 - 572785 | 30090.0 |
| succinate dehydrogenase subunit b | BXY66_0590 | Not Available | Positive | 572841 - 573620 | 29552.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
