Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BXY66_0571 | Not Available | Negative | 559189 - 559737 | 19512.1 |
| succinyl-coa synthetase (adp-forming) beta subunit | BXY66_0572 | Not Available | Negative | 559737 - 560930 | 42345.0 |
| hypothetical protein | BXY66_0573 | Not Available | Negative | 561122 - 561265 | 4788.84 |
| hypothetical protein | BXY66_0574 | Not Available | Negative | 561338 - 562132 | 29614.5 |
| malate dehydrogenase (nad) | BXY66_0575 | Not Available | Negative | 562233 - 563195 | 33571.8 |
| hypothetical protein | BXY66_0576 | Not Available | Positive | 563407 - 563610 | 7174.66 |
| hypothetical protein | BXY66_0577 | Not Available | Positive | 563654 - 564394 | 26127.7 |
| hypothetical protein | BXY66_0578 | Not Available | Negative | 564391 - 564702 | 10853.0 |
| (3s)-malyl-coa thioesterase | BXY66_0579 | Not Available | Positive | 564942 - 565796 | 30302.3 |
| putative membrane protein | BXY66_0580 | Not Available | Positive | 565836 - 566387 | 19692.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
