Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1-acyl-sn-glycerol-3-phosphate acyltransferase | BXY66_0561 | Not Available | Positive | 547723 - 548466 | 27674.4 |
| hypothetical protein | BXY66_0562 | Not Available | Positive | 548453 - 549058 | 21888.0 |
| sterol desaturase/sphingolipid hydroxylase (fatty acid hydroxylase superfamily) | BXY66_0563 | Not Available | Positive | 549189 - 550187 | 38498.4 |
| hypothetical protein | BXY66_0564 | Not Available | Negative | 550230 - 550730 | 18360.1 |
| dihydrolipoamide dehydrogenase | BXY66_0565 | Not Available | Negative | 550879 - 552276 | 48580.9 |
| 2-oxoglutarate dehydrogenase e2 component | BXY66_0566 | Not Available | Negative | 552424 - 553917 | 51522.9 |
| 2-oxoglutarate dehydrogenase e1 component | BXY66_0567 | Not Available | Negative | 553921 - 556881 | 110583.0 |
| hypothetical protein | BXY66_0568 | Not Available | Negative | 556947 - 557054 | 4084.06 |
| hypothetical protein | BXY66_0569 | Not Available | Negative | 557051 - 558085 | 38887.0 |
| succinyl-coa synthetase (adp-forming) alpha subunit | BXY66_0570 | Not Available | Negative | 558271 - 559158 | 30367.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
