Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thiol-disulfide isomerase/thioredoxin | BXY66_0551 | Not Available | Negative | 538066 - 538680 | 22104.6 |
| argininosuccinate lyase | BXY66_0552 | Not Available | Positive | 538702 - 540090 | 50366.1 |
| hypothetical protein | BXY66_0553 | Not Available | Positive | 540090 - 540239 | 5071.16 |
| hypothetical protein | BXY66_0554 | Not Available | Positive | 540340 - 540537 | 6623.97 |
| uncharacterized protein duf2834 | BXY66_0555 | Not Available | Positive | 540610 - 540927 | 11798.8 |
| diaminopimelate decarboxylase | BXY66_0556 | Not Available | Positive | 541011 - 542276 | 45468.6 |
| uncharacterized protein (tigr02302 family) | BXY66_0557 | Not Available | Positive | 542334 - 544925 | 94101.5 |
| putative zn finger-like uncharacterized protein | BXY66_0558 | Not Available | Negative | 544930 - 546003 | 39063.6 |
| cell division transport system atp-binding protein | BXY66_0559 | Not Available | Positive | 546150 - 546827 | 24468.7 |
| cell division transport system permease protein | BXY66_0560 | Not Available | Positive | 546824 - 547726 | 31408.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
