Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| eama domain-containing membrane protein rard | BXY66_0541 | Not Available | Negative | 530364 - 531230 | 29500.5 |
| lysr family transcriptional regulator | BXY66_0542 | Not Available | Negative | 531227 - 532177 | 35010.6 |
| hypothetical protein | BXY66_0543 | Not Available | Positive | 532298 - 532450 | 5554.71 |
| 3-oxoacyl-[acyl-carrier-protein] reductase /acetoacetyl-coa reductase | BXY66_0544 | Not Available | Negative | 532534 - 533256 | 25307.1 |
| acetyl-coa acetyltransferase | BXY66_0545 | Not Available | Negative | 533449 - 534624 | 40760.5 |
| eal domain-containing protein (putative c-di-gmp-specific phosphodiesterase class i) | BXY66_0546 | Not Available | Negative | 534777 - 535622 | 31075.3 |
| hypothetical protein | BXY66_0547 | Not Available | Negative | 535745 - 535915 | 6555.0 |
| sterol desaturase/sphingolipid hydroxylase (fatty acid hydroxylase superfamily) | BXY66_0548 | Not Available | Negative | 536016 - 536948 | 35873.4 |
| hypothetical protein | BXY66_0549 | Not Available | Negative | 536948 - 537334 | 14121.9 |
| hypothetical protein | BXY66_0550 | Not Available | Negative | 537401 - 538036 | 23743.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
