Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase | BXY66_0531 | Not Available | Positive | 523865 - 524704 | 29244.8 |
| tonb family protein | BXY66_0532 | Not Available | Negative | 524750 - 525880 | 40161.2 |
| biopolymer transport protein exbd | BXY66_0533 | Not Available | Negative | 525877 - 526254 | 13511.4 |
| outer membrane transport energization protein exbd | BXY66_0534 | Not Available | Negative | 526259 - 526624 | 13375.2 |
| outer membrane transport energization protein exbb | BXY66_0535 | Not Available | Negative | 526617 - 527261 | 22428.3 |
| hypothetical protein | BXY66_0536 | Not Available | Negative | 527267 - 527695 | 15081.2 |
| octaprenyl-diphosphate synthase | BXY66_0537 | Not Available | Negative | 527886 - 528887 | 36022.6 |
| putative signal transducing protein | BXY66_0538 | Not Available | Positive | 528960 - 529181 | 8007.75 |
| trna1(val) a37 n6-methylase trmn6 | BXY66_0539 | Not Available | Positive | 529178 - 529939 | 27193.9 |
| hypothetical protein | BXY66_0540 | Not Available | Positive | 530174 - 530338 | 6118.33 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
