Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| branched-subunit amino acid transport protein | BXY66_0521 | Not Available | Negative | 514087 - 514413 | 11557.6 |
| putative branched-subunit amino acid permease | BXY66_0522 | Not Available | Negative | 514410 - 515135 | 26035.0 |
| fdhd protein | BXY66_0523 | Not Available | Positive | 515277 - 516161 | 32338.0 |
| molybdopterin-guanine dinucleotide biosynthesis protein a | BXY66_0524 | Not Available | Positive | 516158 - 516802 | 22460.9 |
| molybdopterin guanine dinucleotide biosynthesis accessory protein mobb | BXY66_0525 | Not Available | Positive | 516799 - 517320 | 18870.6 |
| molybdopterin molybdotransferase | BXY66_0526 | Not Available | Positive | 517322 - 518587 | 44481.2 |
| hypothetical protein | BXY66_0527 | Not Available | Negative | 518630 - 519676 | 37947.4 |
| transcription elongation factor grea | BXY66_0528 | Not Available | Negative | 519673 - 520143 | 17101.2 |
| electron-transferring-flavoprotein dehydrogenase | BXY66_0529 | Not Available | Positive | 520402 - 522057 | 59936.4 |
| flp pilus assembly protein tadd | BXY66_0530 | Not Available | Positive | 522169 - 523881 | 62989.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
