Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 8-oxo-dgtp pyrophosphatase mutt (nudix family) | BXY66_0511 | Not Available | Negative | 504014 - 504439 | 16058.3 |
| atp-dependent helicase hrpb | BXY66_0512 | Not Available | Negative | 504577 - 507021 | 88773.1 |
| uncharacterized protein duf3108 | BXY66_0513 | Not Available | Negative | 507061 - 507768 | 25650.8 |
| lao/ao transport system kinase | BXY66_0514 | Not Available | Positive | 507809 - 508831 | 36505.8 |
| translation factor sua5 | BXY66_0515 | Not Available | Negative | 508843 - 509787 | 32397.6 |
| hypothetical protein | BXY66_0516 | Not Available | Positive | 509905 - 511626 | 61152.9 |
| glyoxylase-like metal-dependent hydrolase (beta-lactamase superfamily ii) | BXY66_0517 | Not Available | Positive | 511626 - 512672 | 38693.0 |
| hypothetical protein | BXY66_0518 | Not Available | Positive | 512684 - 513133 | 16471.5 |
| aa3 type cytochrome c oxidase subunit iv | BXY66_0519 | Not Available | Positive | 513272 - 513406 | 4929.99 |
| hypothetical protein | BXY66_0520 | Not Available | Positive | 513424 - 514071 | 23653.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
