Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative secreted zn-dependent protease | BXY66_0491 | Not Available | Negative | 480321 - 480824 | 19209.1 |
| marr family transcriptional regulator with acetyltransferase activity | BXY66_0492 | Not Available | Negative | 481111 - 481986 | 32090.2 |
| nicotinate-nucleotide adenylyltransferase | BXY66_0493 | Not Available | Positive | 482065 - 482694 | 23178.3 |
| threonine/homoserine efflux transporter rhta | BXY66_0494 | Not Available | Negative | 482691 - 483536 | 29596.9 |
| d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase (penicillin-binding protein 4) | BXY66_0495 | Not Available | Positive | 483633 - 485123 | 53072.1 |
| hypothetical protein | BXY66_0496 | Not Available | Positive | 485260 - 485913 | 24008.7 |
| putative kinase | BXY66_0497 | Not Available | Positive | 485921 - 486406 | 17327.7 |
| signal transduction histidine kinase | BXY66_0498 | Not Available | Positive | 486541 - 488136 | 57711.2 |
| arylsulfatase | BXY66_0499 | Not Available | Positive | 488223 - 489665 | 52110.0 |
| tolb-like protein | BXY66_0500 | Not Available | Negative | 489719 - 491239 | 55086.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
