Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BXY66_0039 | Not Available | Negative | 36918 - 38447 | 56133.3 |
| chromosome partitioning protein | BXY66_0040 | Not Available | Negative | 38503 - 39312 | 29869.0 |
| ribosomal large subunit pseudouridine synthase e | BXY66_0041 | Not Available | Negative | 39430 - 39978 | 20536.7 |
| cystathionine gamma-synthase | BXY66_0042 | Not Available | Positive | 40065 - 41207 | 40795.1 |
| hypothetical protein | BXY66_0043 | Not Available | Positive | 41391 - 41846 | 17343.7 |
| glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein | BXY66_0044 | Not Available | Positive | 41903 - 42325 | 16021.7 |
| hypothetical protein | BXY66_0045 | Not Available | Positive | 42463 - 44319 | 68710.9 |
| sugar phosphate permease | BXY66_0046 | Not Available | Positive | 44437 - 45651 | 41993.8 |
| aconitase | BXY66_0047 | Not Available | Positive | 45889 - 48678 | 100390.0 |
| zc3h12a-like ribonuclease protein | BXY66_0048 | Not Available | Positive | 48846 - 49397 | 20610.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
