Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BXY66_0481 | Not Available | Positive | 472444 - 472971 | 18810.3 |
| nitt/taut family transport system substrate-binding protein | BXY66_0482 | Not Available | Positive | 473010 - 473999 | 35266.8 |
| geranylgeranyl reductase family protein | BXY66_0483 | Not Available | Negative | 474072 - 475223 | 42093.8 |
| acyl-coa thioesterase ycia | BXY66_0484 | Not Available | Positive | 475313 - 475726 | 15251.2 |
| brna antitoxin of type ii toxin-antitoxin system | BXY66_0485 | Not Available | Positive | 475840 - 476175 | 12897.7 |
| hypothetical protein | BXY66_0486 | Not Available | Negative | 476178 - 476396 | 7950.69 |
| putative mg2+ transporter-c (mgtc) family protein | BXY66_0487 | Not Available | Negative | 476534 - 476992 | 15996.9 |
| hypothetical protein | BXY66_0488 | Not Available | Negative | 477052 - 477414 | 13009.2 |
| hypothetical protein | BXY66_0489 | Not Available | Negative | 477566 - 478171 | 22659.0 |
| atp-binding cassette chvd family protein | BXY66_0490 | Not Available | Negative | 478575 - 480230 | 61704.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
