Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| zip family zinc transporter | BXY66_0441 | Not Available | Positive | 434390 - 435103 | 24092.3 |
| hxlr family transcriptional regulator | BXY66_0442 | Not Available | Negative | 435107 - 435484 | 14142.1 |
| putative snoal-like aldol condensation-catalyzing enzyme | BXY66_0443 | Not Available | Positive | 435609 - 436385 | 27369.5 |
| glutathione s-transferase | BXY66_0444 | Not Available | Negative | 436450 - 437160 | 25976.0 |
| rna polymerase sigma (sigz) subunit | BXY66_0445 | Not Available | Negative | 437239 - 437790 | 20605.4 |
| 2-isopropylmalate synthase | BXY66_0446 | Not Available | Negative | 437975 - 439540 | 56523.0 |
| mannose-6-phosphate isomerase-like protein (cupin superfamily) | BXY66_0447 | Not Available | Negative | 439553 - 439909 | 13117.4 |
| hypothetical protein | BXY66_0448 | Not Available | Positive | 440014 - 440178 | 5706.07 |
| nad(p)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) | BXY66_0449 | Not Available | Positive | 440234 - 440893 | 22854.2 |
| nad(p)h dehydrogenase (quinone) | BXY66_0450 | Not Available | Negative | 440870 - 441457 | 21261.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
