Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trap-type mannitol/chloroaromatic compound transport system permease small subunit | BXY66_0421 | Not Available | Positive | 410776 - 411339 | 20656.6 |
| tripartite atp-independent transporter dctm subunit | BXY66_0422 | Not Available | Positive | 411342 - 412802 | 52342.4 |
| transcriptional regulator | BXY66_0423 | Not Available | Negative | 412839 - 413765 | 34959.8 |
| trimethylamine--corrinoid protein co-methyltransferase | BXY66_0424 | Not Available | Positive | 413858 - 415378 | 55292.2 |
| dimethylglycine dehydrogenase | BXY66_0425 | Not Available | Positive | 415535 - 417979 | 89670.6 |
| hypothetical protein | BXY66_0426 | Not Available | Positive | 418131 - 419477 | 47316.3 |
| carbohydrate abc transporter atp-binding protein (cut1 family) | BXY66_0427 | Not Available | Negative | 419638 - 420696 | 38599.5 |
| iclr family transcriptional regulator | BXY66_0428 | Not Available | Negative | 420693 - 421484 | 29138.4 |
| carbohydrate abc transporter substrate-binding protein (cut1 family) | BXY66_0429 | Not Available | Positive | 421633 - 422889 | 46794.1 |
| carbohydrate abc transporter membrane protein 1 (cut1 family) | BXY66_0430 | Not Available | Positive | 422986 - 423912 | 35157.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
