Shimia isoporae str. DSM 26433

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Shimia

Description

Shimia isoporae strain DSM 26433 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 29.0°C. This specific temperature preference suggests that S. isoporae may be well-adapted to environments that are moderately warm, potentially indicating a niche within temperate regions or specific habitats where such thermal conditions prevail. As a Gram-negative organism, S. isoporae possesses a distinctive cell wall structure characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural feature is associated with various functional implications, including resistance to certain antibiotics and the ability to interact with host organisms in unique ways, although specific interactions remain to be elucidated. The aerobic nature of S. isoporae indicates that it relies on oxygen for its metabolic processes, which may influence its ecological roles, such as organic matter decomposition or nutrient cycling in its environment. Understanding the metabolic pathways and ecological interactions of S. isoporae could contribute valuable insights into the dynamics of microbial communities in which it participates. Overall, the traits of Shimia isoporae suggest its potential importance in specific ecological contexts, particularly in environments where aerobic activity is a key component of ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusShimia
SpeciesShimia isoporae
StrainDSM 26433

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shimia isoporae strain DSM 26433 Ga0170381_19, whole genome

Gene Summary

Adenine Count

920505 bp

Thymine Count

914254 bp

Guanine Count

1190771 bp

Cytosine Count

1207235 bp

Genome Length

4232765 bp

Protein-coding Genes

4082 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptide/nickel transport system permease proteinBXY66_0411Not AvailablePositive400722 - 40166934279.4
peptide/nickel transport system atp-binding proteinBXY66_0412Not AvailablePositive401666 - 40337863176.2
glyoxylase-like metal-dependent hydrolase (beta-lactamase superfamily ii)BXY66_0413Not AvailableNegative403412 - 40420929818.3
gntr family transcriptional regulatorBXY66_0414Not AvailablePositive404332 - 40506327480.1
3-isopropylmalate dehydrogenaseBXY66_0415Not AvailablePositive405092 - 40619239324.0
uncharacterized protein ygbk (duf1537 family)BXY66_0416Not AvailablePositive406194 - 40745944116.8
ribulose-5-phosphate 4-epimerase/fuculose-1-phosphate aldolaseBXY66_0417Not AvailablePositive407492 - 40809421127.5
putative dehydrogenaseBXY66_0418Not AvailablePositive408098 - 40912638071.2
quinol monooxygenase yginBXY66_0419Not AvailablePositive409137 - 40943310732.7
trap-type mannitol/chloroaromatic compound transport system substrate-binding proteinBXY66_0420Not AvailablePositive409644 - 41066937472.5

Displaying genes 411 – 420 of 4136 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.