Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide/nickel transport system permease protein | BXY66_0411 | Not Available | Positive | 400722 - 401669 | 34279.4 |
| peptide/nickel transport system atp-binding protein | BXY66_0412 | Not Available | Positive | 401666 - 403378 | 63176.2 |
| glyoxylase-like metal-dependent hydrolase (beta-lactamase superfamily ii) | BXY66_0413 | Not Available | Negative | 403412 - 404209 | 29818.3 |
| gntr family transcriptional regulator | BXY66_0414 | Not Available | Positive | 404332 - 405063 | 27480.1 |
| 3-isopropylmalate dehydrogenase | BXY66_0415 | Not Available | Positive | 405092 - 406192 | 39324.0 |
| uncharacterized protein ygbk (duf1537 family) | BXY66_0416 | Not Available | Positive | 406194 - 407459 | 44116.8 |
| ribulose-5-phosphate 4-epimerase/fuculose-1-phosphate aldolase | BXY66_0417 | Not Available | Positive | 407492 - 408094 | 21127.5 |
| putative dehydrogenase | BXY66_0418 | Not Available | Positive | 408098 - 409126 | 38071.2 |
| quinol monooxygenase ygin | BXY66_0419 | Not Available | Positive | 409137 - 409433 | 10732.7 |
| trap-type mannitol/chloroaromatic compound transport system substrate-binding protein | BXY66_0420 | Not Available | Positive | 409644 - 410669 | 37472.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
