Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-fucose isomerase-like protein | BXY66_0401 | Not Available | Positive | 389215 - 390597 | 49217.1 |
| putative dehydrogenase | BXY66_0402 | Not Available | Positive | 390599 - 391684 | 39952.6 |
| aldose 1-epimerase | BXY66_0403 | Not Available | Positive | 391681 - 392679 | 36219.9 |
| succinate semialdehyde dehydrogenase | BXY66_0404 | Not Available | Positive | 392676 - 394124 | 50815.6 |
| (s)-sulfolactate dehydrogenase | BXY66_0405 | Not Available | Positive | 394154 - 395071 | 32389.3 |
| sulfopyruvate decarboxylase subunit alpha | BXY66_0406 | Not Available | Positive | 395092 - 395598 | 18386.7 |
| sulfopyruvate decarboxylase subunit beta | BXY66_0407 | Not Available | Positive | 395595 - 396149 | 19319.0 |
| peptide/nickel transport system substrate-binding protein | BXY66_0408 | Not Available | Positive | 396334 - 397914 | 58291.2 |
| peptide/nickel transport system substrate-binding protein | BXY66_0409 | Not Available | Positive | 398068 - 399633 | 56975.1 |
| peptide/nickel transport system permease protein | BXY66_0410 | Not Available | Positive | 399742 - 400722 | 35899.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
