Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| maleylacetoacetate isomerase | BXY66_0029 | Not Available | Negative | 28286 - 28921 | 23077.8 |
| uncharacterized protein duf2783 | BXY66_0030 | Not Available | Negative | 28918 - 29118 | 7019.3 |
| 3-(3-hydroxy-phenyl)propionate hydroxylase | BXY66_0031 | Not Available | Negative | 29122 - 30732 | 60224.1 |
| glyoxylase-like metal-dependent hydrolase (beta-lactamase superfamily ii) | BXY66_0032 | Not Available | Negative | 30829 - 31779 | 34790.8 |
| dihydrofolate reductase | BXY66_0033 | Not Available | Negative | 31785 - 32321 | 19544.2 |
| fumarylacetoacetate hydrolase | BXY66_0034 | Not Available | Negative | 32337 - 33593 | 45661.8 |
| ribonuclease bn (trna processing enzyme) | BXY66_0035 | Not Available | Negative | 33612 - 34463 | 30410.5 |
| homogentisate 1,2-dioxygenase | BXY66_0036 | Not Available | Negative | 34565 - 35920 | 50567.0 |
| marr family transcriptional regulator | BXY66_0037 | Not Available | Positive | 35997 - 36491 | 18641.3 |
| putative secreted protein (tigr04161 family) | BXY66_0038 | Not Available | Positive | 36634 - 36909 | 9597.46 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
