Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| branched-chain alpha-keto acid dehydrogenase e2 component | BXY66_0381 | Not Available | Positive | 364407 - 365693 | 45955.9 |
| dihydrolipoamide dehydrogenase | BXY66_0382 | Not Available | Positive | 365694 - 367052 | 47248.3 |
| atp-binding cassette subfamily b protein | BXY66_0383 | Not Available | Negative | 367117 - 368910 | 64481.5 |
| tat proofreading chaperone tord | BXY66_0384 | Not Available | Negative | 369189 - 369800 | 22918.1 |
| trimethylamine-n-oxide reductase (cytochrome c) | BXY66_0385 | Not Available | Negative | 369801 - 372266 | 91383.4 |
| trimethylamine-n-oxide reductase cytochrome c-type subunit torc | BXY66_0386 | Not Available | Negative | 372276 - 373460 | 44111.4 |
| nitrate reductase nape | BXY66_0387 | Not Available | Negative | 373542 - 373715 | 6333.83 |
| carbohydrate abc transporter atp-binding protein (cut1 family) | BXY66_0388 | Not Available | Negative | 373895 - 374911 | 36795.6 |
| hypothetical protein | BXY66_0389 | Not Available | Negative | 374911 - 376158 | 46564.4 |
| carbohydrate abc transporter membrane protein 2 (cut1 family) | BXY66_0390 | Not Available | Negative | 376161 - 377366 | 44312.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
