Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| galactonate dehydratase | BXY66_0351 | Not Available | Positive | 335161 - 336369 | 43703.9 |
| succinate-semialdehyde dehydrogenase/glutarate-semialdehyde dehydrogenase | BXY66_0352 | Not Available | Positive | 336413 - 337852 | 51472.7 |
| d-galactarolactone cycloisomerase | BXY66_0353 | Not Available | Positive | 337849 - 339012 | 42432.0 |
| 2-dehydro-3-deoxygalactonokinase | BXY66_0354 | Not Available | Positive | 339017 - 339943 | 32407.0 |
| putative transposase | BXY66_0355 | Not Available | Positive | 340071 - 340778 | 28298.2 |
| hydroxyquinol 1,2-dioxygenase | BXY66_0356 | Not Available | Negative | 340854 - 341720 | 31939.3 |
| tripartite atp-independent transporter dctm subunit | BXY66_0357 | Not Available | Negative | 341730 - 343037 | 46050.4 |
| trap-type c4-dicarboxylate transport system permease small subunit | BXY66_0358 | Not Available | Negative | 343034 - 343594 | 20399.3 |
| trap-type c4-dicarboxylate transport system substrate-binding protein | BXY66_0359 | Not Available | Negative | 343621 - 344697 | 38082.4 |
| putative osmc-like protein | BXY66_0360 | Not Available | Negative | 344738 - 345193 | 16438.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
