Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arylsulfatase a-like enzyme | BXY66_0341 | Not Available | Negative | 324430 - 325959 | 57749.0 |
| carbohydrate abc transporter substrate-binding protein (cut1 family) | BXY66_0342 | Not Available | Positive | 326090 - 327313 | 43722.5 |
| carbohydrate abc transporter membrane protein 1 (cut1 family) | BXY66_0343 | Not Available | Positive | 327376 - 328245 | 32539.2 |
| carbohydrate abc transporter membrane protein 2 (cut1 family) | BXY66_0344 | Not Available | Positive | 328242 - 329123 | 32259.7 |
| 3-oxoacyl-[acyl-carrier protein] reductase | BXY66_0345 | Not Available | Positive | 329120 - 329884 | 26239.4 |
| lactose abc transporter atp-binding protein | BXY66_0346 | Not Available | Positive | 329877 - 330962 | 39383.7 |
| sugar lactone lactonase yvre | BXY66_0347 | Not Available | Negative | 331009 - 331866 | 30358.2 |
| gntr family transcriptional regulator | BXY66_0348 | Not Available | Positive | 331963 - 332664 | 26280.1 |
| formylglycine-generating enzyme required for sulfatase activity | BXY66_0349 | Not Available | Positive | 332657 - 333589 | 33951.7 |
| arylsulfatase a-like enzyme | BXY66_0350 | Not Available | Negative | 333605 - 335017 | 53618.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
