Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nicotianamine synthase-like protein | BXY66_0329 | Not Available | Positive | 314648 - 315463 | 30528.5 |
| hypothetical protein | BXY66_0330 | Not Available | Positive | 315456 - 315983 | 19099.3 |
| hypothetical protein | BXY66_0331 | Not Available | Positive | 315986 - 316405 | 15006.6 |
| hypothetical protein | BXY66_0332 | Not Available | Positive | 316407 - 316964 | 20762.0 |
| hypothetical protein | BXY66_0333 | Not Available | Positive | 316957 - 317286 | 12587.3 |
| 3-oxoacyl-[acyl-carrier protein] reductase | BXY66_0334 | Not Available | Positive | 317294 - 318013 | 24978.9 |
| n-hydroxyarylamine o-acetyltransferase | BXY66_0335 | Not Available | Positive | 318031 - 318912 | 32597.2 |
| atp-grasp domain-containing protein | BXY66_0336 | Not Available | Positive | 318909 - 320264 | 48887.3 |
| phenylacetate-coenzyme a ligase paak-like adenylate-forming protein | BXY66_0337 | Not Available | Positive | 320245 - 321507 | 46213.7 |
| phytoene dehydrogenase-like protein | BXY66_0338 | Not Available | Positive | 321504 - 323135 | 59384.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
