Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-d-ribose 1-methylphosphonate 5-triphosphate synthase subunit phng | BXY66_0319 | Not Available | Negative | 306398 - 306814 | 15130.1 |
| gntr family phosphonate transport system transcriptional regulator | BXY66_0320 | Not Available | Negative | 306807 - 307526 | 26339.2 |
| hypothetical protein | BXY66_0321 | Not Available | Positive | 307836 - 307961 | 4488.2 |
| hypothetical protein | BXY66_0322 | Not Available | Negative | 308138 - 308656 | 19182.3 |
| phosphopantetheinyl transferase | BXY66_0323 | Not Available | Negative | 308743 - 309381 | 24312.2 |
| lyttr dna-binding domain-containing protein | BXY66_0324 | Not Available | Negative | 309461 - 310264 | 30090.9 |
| acyl carrier protein | BXY66_0325 | Not Available | Positive | 310639 - 311001 | 13675.1 |
| hypothetical protein | BXY66_0326 | Not Available | Positive | 310994 - 312136 | 40545.7 |
| 3-oxoacyl-[acyl-carrier-protein] synthase ii | BXY66_0327 | Not Available | Positive | 312133 - 313398 | 45604.0 |
| indoleacetate--lysine synthetase | BXY66_0328 | Not Available | Positive | 313411 - 314664 | 46031.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
